protein secondary structure

It is recently suggested that (predicted) accessible surface area can be used to improve prediction of protein secondary structure.

Direct observation of protein secondary structure in gas vesicles by atomic force microscopy.

Other protein secondary structure assignment categories exist (sharp turns, Omega loops etc.), but they are less frequently used.

HB plot offers a simple way of analyzing protein secondary structure and tertiary structure.

Alternatively, the amino acid substitution could occur in a region of the protein which does not significantly affect the protein secondary structure or function.

Protein secondary structure was predicted using a multiple alignment as the input for the program PHD [ 22].

The protein secondary structure can be predicted using algorithms to predict the occurrence of alpha helices and beta sheets within the protein.

A Polyproline Helix is a type of protein secondary structure, which occurs in proteins comprising repeating proline residues.

Tertiary structure is formed by the packing of protein secondary structure elements into compact globular units called protein domains.

The accuracy of current protein secondary structure prediction methods is assessed in weekly benchmarks such as LiveBench and EVA.

With David Wishart and Brian Sykes, he developed the chemical shift index for NMR assignment of protein secondary structure ( & ).

PELE (Protein Secondary Structure Prediction) was used to predict the secondary structure of C20orf111.

Linus Pauling is credited with the successful prediction of regular protein secondary structures based on hydrogen bonding, an idea first put forth by William Astbury in 1933 .

Modules consisting of protein secondary structure can be designed to perform specific functions; for example, it has been demonstrated that alpha helices can be used as functional peptide catalysts.

He developed a method for calculating concentration of antibodies and antigens from ELISA data, and he a prediction method for protein secondary structure prediction.

The alpha-helices can be identified in protein structure using several computational methods, one of which is DSSP (Dictionary of Protein Secondary Structure).

Predicted secondary structure: Secondary structure of CCDC78 was predicted using the protein secondary structure prediction tool PELE.

PHYRE2 was used to predict protein secondary structure of human FAM46C as well as trichoplax TRIADDRAFT-14293.

The Dictionary of Protein Secondary Structure, in short DSSP, is commonly used to describe the protein secondary structure with single letter codes.

In Saccharomyces cerevisiae synonymous codon usage has been shown to influence mRNA folding stability, with mRNA encoding different protein secondary structure preferring different codons.

There are several methods for defining protein secondary structure (e.g. DEFINE, DSSP, STRIDE (protein), SST).

The cyclol hypothesis stimulated many scientists to research questions in protein structure and chemistry, and was a precursor of the more accurate models hypothesized for the DNA double helix and protein secondary structure.

Maurice Loyal Huggins (19 September 1897 - 17 December 1981) was a scientist who independently conceived the idea of hydrogen bonding and who was an early advocate for their role in stabilizing protein secondary structure.

In protein structure, STRIDE (Structural identification) is an algorithm for the assignment of protein secondary structure elements given the atomic coordinates of the protein, as defined by X-ray crystallography, protein NMR, or another protein structure determination method.

In 1951, based on the structures of amino acids and peptides and the planar nature of the peptide bond, Pauling, Robert Corey and Herman Branson correctly proposed the alpha helix and beta sheet as the primary structural motifs in protein secondary structure.